![]() Analysis of spatial datasets (Sequencing-based).Analysis of spatial datasets (Imaging-based).Map COVID PBMC datasets to a healthy reference.Sketch integration using a 1 million cell dataset from Parse Biosciences.Integrating scRNA-seq and scATAC-seq data.Dictionary Learning for cross-modality integration.theme_stata: theme based on Stata graph schemes.theme_economist : theme based on the plots in the economist magazine.Change the plot background color (not the panel).Remove plot panel borders and grid lines.Change the colors of the plot panel background and the grid lines.Customize the appearance of the plot background.Functions: scale_linetype(), scale_linetype_manual(), scale_color_manual(), scale_size_manual().Functions: geom_text(), annotate(), annotation_custom().annotation_custom : Add a static text annotation in the top-right, top-left, ….Add a text annotation at a particular coordinate.Change the text color and size by groups.Text annotations using the function geom_text.Functions: scale_shape_manual(), scale_color_manual(), scale_size_manual().Change point shapes, colors and sizes manually.Change the point shapes, colors and sizes automatically.Gradient, diverging colors: scale_color_gradient2(), scale_fill_gradient2(), scale_colour_gradientn().Gradient, continuous colors: scale_color_gradient(), scale_fill_gradient(), scale_fill_continuous(), scale_color_continuous().Manual colors: scale_color_manual(), scale_fill_manual().Gray scales: scale_color_grey(), scale_fill_grey().Brewer palettes: scale_colour_brewer(), scale_fill_brewer(), scale_color_brewer().Change colors automatically and manually.Functions: guides(), guide_legend(), guide_colourbar(). ![]() guides() : set or remove the legend for a specific aesthetic.Remove slashes in the legend of a bar plot.Change the background color of the legend box.Change the legend title and text font styles.Functions: labs(), ggtitle(), xlab(), ylab(), update_labels().Change the appearance of the main title and axis labels.Main title, axis labels and legend title.Create a pie chart from a factor variable.Functions: geom_errorbarh(), geom_errorbar(), geom_linerange(), geom_pointrange(), geom_crossbar(), stat_summary().Dot plot with mean point and error bars.Functions: geom_line(), geom_step(), geom_path(), geom_errorbar().Change manually the appearance of lines.Change automatically the line types by groups.Change globally the appearance of lines. ![]()
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